Function reference • disambr

All functions
`create_message()`	Creates message string for reporting during procedures
`dhms()`	Formats time difference as X days HH:MM:SS
`disambr_add_set_attr()`	Add disambr attribures to focal set from template set and update some of them
`disambr_filter_authors_by_researcher_ids()`	Subsets WoS authors table with Researcher IDs
`disambr_get_first_data_set()`	Get first data set in list sets
`disambr_get_last_set()`	Gets last set in sets which strength less or equal than 0.5
`disambr_get_last_unstrong_set()`	Gets last set from sets with strength <= 0.5 and excludes from this set all sets with strength of 1
`disambr_get_last_weak_set()`	Gets last set in sets which strength less or equal than 0.5
`disambr_get_output_set()`	Gets output set from sets (in case we already made it)
`disambr_get_strong_set()`	Get sets with strength parameter of 1 and rbind them into single set
`disambr_get_truth_set()`	Get sets with strength parameter of 10 (ground thruth)
`disambr_in_sets()`	Checks if sets with certain attribures are present
`disambr_make_wos_tsv_author_year_citations()`	Makes citations table by matching first author - year keys. This, of course, can produce false positives matched
`disambr_make_wos_tsv_authors()`	Parses all WoS field related to authors and makes author table
`disambr_make_wos_tsv_publications()`	Make set of publications
`disambr_make_wos_tsv_references()`	Make references table from WoS tsv data
`disambr_match_authors_if_sharing_coauthors()`	Make a set of matched authors that share co-authors
`disambr_merge_authors_if_citing_others_papers()`	Make a set of matched authors bases on the cases when one author cites the others paper.
`disambr_merge_authors_if_citing_self_citation()`	Make a set of matched authors based on cases when one author cites others self citation. Self-citations here are detected based on DOI.
`disambr_merge_authors_with_common_keywords()`	Makes set of authors with number of keywords in their papers in common
`disambr_merge_authors_with_common_references()`	Make set of authors that have number of references in common
`disambr_merge_authors_with_same_affiliation()`	Makes set of matched authors based on same affiliation
`disambr_merge_authors_with_same_emails()`	Makes set of matched authors bases on same email addresses
`disambr_merge_authors_with_same_researcher_ids()`	For testing. Makes so called ground truth set based on same research IDs
`disambr_merge_authors_with_similar_initials()`	Makes set of similar authors based on their initials
`disambr_merge_authors_with_similar_last_names()`	Makes set of similar authors based on their last names
`disambr_message()`	Report a message with message()
`disambr_message_finish()`	Post a starting message for disambr procedure. Records time started in `disambr_start_time` variable in its `parent.frame()`
`disambr_message_start()`	Post a starting message for disambr procedure. Records time started in `disambr_start_time` variable in its `parent.frame()`
`disambr_read()`	Reads the data for disambiguation
`disambr_read_file()`	Reads file based on file extention
`disambr_read_output_set()`	Reads last output set saved on disk
`disambr_read_tsv()`	Read tsv file
`disambr_read_tsv_wos()`	Reads WoS tsv export file and makes disambr set out of it (just adding some attributes to the data.table)
`disambr_save_set()`	Save set and adds file attribute
`disambr_set_attr()`	Adds attribures to the set with data.table::setattr
`disambr_split_authors_if_on_the_same_paper()`	Makes sets of co-authors assuming that all authors on paper are different person.
`disambr_stats()`	Make a statistics for a collection of sets (specific algorithm) and writes to the file in `sets_dir`
`disambr_stats_table()`	Makes comparative table with statistics
`disambr_stop()`	Report a message with stop()
`disambr_subsets()`	Filters list of sets
`disambr_warning()`	Report a message with warning()
`disambr_wos_tsv_parse_af()`	Parses AF (author full name) column of WoS saved records export
`disambr_wos_tsv_parse_au()`	Parses AU column of WoS saved records export
`disambr_wos_tsv_parse_c1()`	Parses C1 (author adress/affiliation) column of WoS saved records export
`disambr_wos_tsv_parse_cr()`	Parses WoS CR (Cited References) record into separate talbe
`disambr_wos_tsv_parse_em()`	Parses EM (email) column of WoS saved records export
`disambr_wos_tsv_parse_oi()`	Parses OI column of WoS saved records export
`disambr_wos_tsv_parse_ri()`	Parses RI column of WoS saved records export
`disambr_wos_tsv_parse_rp()`	Parses RP (reprint author) column of WoS saved records export
`get_file_extension()`	Extention extractor. Same as tools::file_ext but for NULL input returns NULL instead of logical(0).
`get_upper_triangle_index()`	Returns the index of element in upper triangle of squared `n` by `n` matrix
`match_fuzzy()`	Fuzzy match all combinations of character vector
`parse_files_path()`	Returns vector of file paths from path(s) recursively
`read_to_utf8()`	Reads file as UTF-8, convert it if other encoding is deteted
`recode_return_characters()`	Fixed end of line characters in wierd text
`stop_unless()`	Stops process unless cond is true

Reference

All functions